Publications

Click here for Samantha Lycett Google Scholar Profile List

Selected Publications

Influenza

Estimating reassortment rates in co-circulating Eurasian swine influenza viruses
S. J. Lycett, G. Baillie, E. Coulter, S. Bhatt, P. Kellam, J. W. McCauley, J. L. N. Wood, I. H. Brown, O. G. Pybus & A. J. Leigh Brown ; for the Combating Swine Influenza Initiative (COSI) Consortium
J Gen Virol November 2012 vol. 93 no. Pt 11 2326-2336

Origin and Fate of A/H1N1 Influenza in Scotland during 2009
Samantha Lycett, Nigel J McLeish, Christopher Robertson, William Carman, Gregory Baillie, James McMenamin, Andrew Rambaut, Peter Simmonds, Mark Woolhouse, Andrew J Leigh Brown
J Gen Virol June 2012 vol. 93 no. Pt 6 1253-1260

Detection of Mammalian Virulence Determinants in Highly Pathogenic Avian Influenza H5N1 Viruses: Multivariate Analysis of Published Data
S. J. Lycett, M. J. Ward, F. I. Lewis, A. F. Y. Poon, S. L. Kosakovsky Pond, and A. J. Leigh Brown
J. Virol. (2009) 83(19): 9901-9910

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.
Gavin J. D. Smith, Dhanasekaran Vijaykrishna, Justin Bahl, Samantha J. Lycett, Michael Worobey, Oliver G. Pybus, Siu Kit Ma, Chung Lam Cheung, Jayna Raghwani, Samir Bhatt, J. S. Malik Peiris, Yi Guan & Andrew Rambaut
Nature (2009) 459(7250): 1122-1125

HIV

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic
Andrew J. Leigh Brown, Samantha J. Lycett, Lucy Weinert, Gareth J. Hughes, Esther Fearnhill and David T. Dunn on behalf of the UK HIV Drug Resistance Collaboration
J Infect Dis. (2011) 204 (9): 1463-1469

Molecular Phylodynamics of the Heterosexual HIV Epidemic in the United Kingdom
G. J. Hughes, E. Fearnhill, D. Dunn, S. J. Lycett, A. Rambaut, Andrew J. Leigh Brown, on behalf of the UK HIV Drug Resistance Collaboration
PLoS Pathog (2009) 5(9): e1000590


Conference Webcasts of work

Lycett S. J., Weiland M., Raghwani J., Rambaut A., Leigh Brown A. J., (2009) Adaptation of H1N1 and H5N1 Influenza viruses to mammalian hosts Epidemics 2 Athens, Greece 2-4 Dec 2009
Webcast of presentation - Conference Website

Leigh Brown A. J., Lycett S. J., Hughes G. J., Fearnhill E., Dunn D., Rambaut A., (2009) Network Structure of HIV Transmission Chains Reconstructed from Viral Sequences Epidemics 2 Athens, Greece 2-4 Dec 2009
Webcast of presentation - Conference Website

Hughes G., Leigh-Brown A., Rambaut A., Lycett S., Lewis F., Fearnhill E., (2008) Recent Phylodynamics of the HIV Epidemic among MSM in the United Kingdom CROI 2008, Boston
Abstract - CROI Webcast, slides 67-81 - Report on the conference